Title Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer
Authors Shu, Shaokun
Wu, Hua-Jun
Ge, Jennifer Y.
Zeid, Rhamy
Harris, Isaac S.
Jovanovic, Bojana
Murphy, Katherine
Wang, Binbin
Qiu, Xintao
Endress, Jennifer E.
Reyes, Jaime
Lim, Klothilda
Font-Tello, Alba
Syamala, Sudeepa
Xiao, Tengfei
Chilamakuri, Chandra Sekhar Reddy
Papachristou, Evangelia K.
D'Santos, Clive
Anand, Jayati
Hinohara, Kunihiko
Li, Wei
McDonald, Thomas O.
Luoma, Adrienne
Modiste, Rebecca J.
Quang-De Nguyen
Michel, Brittany
Cejas, Paloma
Kadoch, Cigall
Jaffe, Jacob D.
Wucherpfennig, Kai W.
Qi, Jun
Liu, X. Shirley
Long, Henry
Brown, Myles
Carroll, Jason S.
Brugge, Joan S.
Bradner, James
Michor, Franziska
Polyak, Kornelia
Affiliation Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02215 USA
Dana Farber Canc Inst, Dept Data Sci, Boston, MA 02215 USA
Dana Farber Canc Inst, Dept Canc Immunol & Virol, Boston, MA 02215 USA
Dana Farber Canc Inst, Dept Pediat Oncol, Boston, MA 02215 USA
Dana Farber Canc Inst, Ctr Funct Canc Epigenet, Boston, MA 02215 USA
Dana Farber Canc Inst, Ctr Canc Evolut, Boston, MA 02215 USA
Harvard Med Sch, Dept Med, Boston, MA 02115 USA
Harvard Med Sch, Dept Cell Biol, Boston, MA 02115 USA
Harvard Med Sch, Dept Microbiol & Immunobiol, Boston, MA 02115 USA
Harvard Med Sch, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Harvard TH Chan Sch Publ Hlth, Boston, MA 02115 USA
Harvard Univ, Dept Stem Cell & Regenerat Biol, Cambridge, MA 02138 USA
Harvard Med Sch, Harvard MIT Div Hlth Sci & Technol, Boston, MA 02215 USA
Ludwig Ctr Harvard, Boston, MA 02115 USA
Univ Cambridge, Canc Res UK Cambridge Inst, Robinson Way, Cambridge CB2 0RE, England
Eli & Edythe L Broad Inst, Cambridge, MA 02142 USA
Dana Farber Canc Inst, Ctr Biomed Imaging Oncol, Lurie Family Imaging Ctr, Boston, MA 02215 USA
Peking Univ, Canc Hosp & Inst, Beijing 100142, Peoples R China
C4 Therapeut Inc, Watertown, MA 02472 USA
Tongji Univ, Shanghai Pulm Hosp, Shanghai 200092, Peoples R China
Childrens Natl Med Ctr, Washington, DC 20010 USA
Novartis Inst BioMed Res, Cambridge, MA 02139 USA
Keywords SELECTIVE-INHIBITION
SUPER-ENHANCERS
CELL IDENTITY
RECRUITMENT
VALIDATION
LANDSCAPE
DISCOVERY
BRD4
Issue Date 18-Jun-2020
Publisher MOLECULAR CELL
Abstract BET bromodomain inhibitors (BBDIs) are candidate therapeutic agents for triple-negative breast cancer (TNBC) and other cancer types, but inherent and acquired resistance to BBDIs limits their potential clinical use. Using CRISPR and small-molecule inhibitor screens combined with comprehensive molecular profiling of BBDI response and resistance, we identified synthetic lethal interactions with BBDIs and genes that, when deleted, confer resistance. We observed synergy with regulators of cell cycle progression, YAP, AXL, and SRC signaling, and chemotherapeutic agents. We also uncovered functional similarities and differences among BRD2, BRD4, and BRD7. Although deletion of BRD2 enhances sensitivity to BBDIs, BRD7 loss leads to gain of TEAD-YAP chromatin binding and luminal features associated with BBDI resistance. Single-cell RNA-seq, ATAC-seq, and cellular barcoding analysis of BBDI responses in sensitive and resistant cell lines highlight significant heterogeneity among samples and demonstrate that BBDI resistance can be pre-existing or acquired.
URI http://hdl.handle.net/20.500.11897/617347
ISSN 1097-2765
DOI 10.1016/j.molcel.2020.04.027
Indexed SCI(E)
Appears in Collections: 北京肿瘤医院

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